rnaseq-pipeline-cleanup

What problem does it solve?

This Skill provides a safe and systematic way to clean up intermediate and final result files generated by an RNA-seq analysis pipeline, allowing users to reset their workspace or free up disk space without losing essential source data or scripts.

Core Features & Use Cases

• Selective Cleanup: Offers multiple strategies to remove specific types of generated files (e.g., QC reports, analysis outputs, plots) or perform a full reset.
• Preserves Source Data: Ensures that original FASTQ files, reference genomes, and analysis scripts remain untouched.
• Use Case: A student has completed a demonstration of the RNA-seq pipeline and needs to reset their environment before the next session. They can use the 'full' cleanup option to remove all generated outputs, returning the project to its initial state.

Quick Start

Use the rnaseq-pipeline-cleanup skill to perform a full reset of the RNA-Seq project.