research.literature.matrix

Aggregates paper notes into a method-dataset-metric comparison matrix and JSONL index.

Updated May 9, 2026
One-click install
npx skills add https://github.com/0h-n0/auto-research --skill research-literature-matrix-0h-n0
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: research.literature.matrix
Source: https://github.com/0h-n0/auto-research/tree/main/skills/research.literature.matrix
Command: npx skills add https://github.com/0h-n0/auto-research --skill research-literature-matrix-0h-n0

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve? When surveying dozens of papers for an LLM research project, notes end up scattered and inconsistent, making it hard to compare methods, datasets, and metrics or to spot coverage gaps and contradictory claims. This Skill consolidates deep-reading notes into a fixed schema and generates a unified comparison matrix. ## Core Features & Use Cases - Fixed paper note schema: Enforces a structured template (Problem, Method, Dataset, Metric, Claim, Limitation, Replicability Checklist) so every paper note is machine-parseable. - MATRIX.md generation: Parses all notes and produces a Markdown comparison table plus coverage analysis (dataset/method histograms) and contradiction detection across papers. - Parallel-safe coordination: Uses a claim column in papers.jsonl as a mutex so multiple paper-deep-reader agents can work concurrently without duplicating effort. - Use Case: During Phase 2 of an auto-research survey, after several agents finish deep-reading arXiv papers, run this Skill to merge their notes into a single comparison matrix revealing that GSM8K × DPO has only one supporting paper. ## Quick Start Use the research.literature.matrix skill to aggregate the paper notes in .research/<slug>/02_SURVEY/notes into MATRIX.md and update papers.jsonl.

Frequently Asked Questions about research.literature.matrix

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I build a literature comparison matrix from research paper notes?▼

Write each paper note using the fixed schema (Problem, Method, Dataset, Metric, Claim, Limitation, Replicability), then run this Skill to parse all notes in the notes directory and generate MATRIX.md with a comparison table, coverage analysis, and detected contradictions.

How to prevent duplicate work when multiple agents read papers in parallel?▼

Use the claim column in papers.jsonl as a mutex. Before dispatching a paper-deep-reader agent, set the claim field to that agent's ID; on completion, update deep_read_at and note_path so other agents skip already-claimed papers.

What format should paper summary notes follow for automated parsing?▼

Each note must be a Markdown file named by arXiv ID containing the fixed sections: Problem, Method, Equations/Algorithms, Dataset, Metric, Claim, Limitation, Replicability Checklist, and Our Relevance. The matrix generator parses these sections with regular expressions.

Can this detect contradictory claims across surveyed papers?▼

Yes. The matrix generation step extracts pairs of papers reporting opposite-direction results on the same dataset and lists them under contradictions and open questions, flagging cases that need reproducibility verification.

What are the limitations of schema-based literature aggregation?▼

It depends on notes strictly following the fixed schema; missing sections appear as question marks or n/a in the matrix. It also cannot read PDFs itself and requires upstream agents to produce the structured notes first.