research-execution

Diagnoses theory derivation and method justification chains in social science research designs.

15|2|Updated May 4, 2026
One-click install
npx skills add https://github.com/AppleCG/academic-research-workflow --skill research-execution-applecg
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: research-execution
Source: https://github.com/AppleCG/academic-research-workflow/tree/main/sub-skills/research-execution
Command: npx skills add https://github.com/AppleCG/academic-research-workflow --skill research-execution-applecg

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve? Researchers who have settled on a topic often struggle to turn a research question into a defensible study design: hypotheses lack explanatory logic, methods are chosen by habit rather than justified, and citations pile up without building an argument. This Skill provides a structured diagnostic chain—from theory derivation to method justification—so every design choice can be defended before reviewers ask. ## Core Features & Use Cases - Theory Derivation Diagnosis (Step A): Checks explanatory logic, hypothesis specificity, theoretical coherence across variables, and concept operationalization (denominator, unit, boundary), based on AMJ hypothesis-building standards. - Method Justification Diagnosis (Step C): Audits the throughline from research question to results, applies a three-layer defense (operational, choice, epistemological), and tests method-theory consistency. - Literature Dialogue Throughout: Distinguishes citations that support your own argument from decorative citation stacking, with separate checks for the derivation and justification phases. - Use Case: A PhD student whose reviewer said "the method justification is insufficient" can run the C1 throughline check and C2 three-layer defense to locate exactly which link—epistemology, method choice, or analysis—broke, and repair it with source-attributed guidance. ## Quick Start Ask the assistant to diagnose your research design by pasting your research question, hypotheses, and planned methods, and request a full execution-layer review from theory derivation through method justification.

Frequently Asked Questions about research-execution

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I justify my research method choice to reviewers?▼

Method justification works on three layers: operational (what you did), choice (why this method over alternatives), and epistemological (under what paradigm the choice is valid). Most papers stop at the operational layer; comparing your method to alternatives and stating your epistemological basis addresses reviewer challenges preemptively.

How do I turn a research question into testable hypotheses?▼

Build explanatory logic using three approaches: grounding in existing theory, citing supporting empirical evidence, and narrating the mediating mechanism. Then test specificity (is your theory broader than your hypothesis?) and coherence (why these variables and only these?).

What is a throughline in research design?▼

A throughline is the logical chain connecting research question, epistemology, methodology, data methods, analysis, and results. Common breaks include epistemology-RQ conflicts, decorative theory frameworks, methods that cannot collect the needed evidence type, and results that fail to answer the original question.

Does this diagnostic approach work for qualitative research?▼

Yes, but the justification logic differs by paradigm. Qualitative paths emphasize epistemological statements, methodological tradition, and triangulation rather than alternative-explanation elimination. The Skill provides separate parameter tables for quantitative, qualitative, and mixed-methods paths.

Why do reviewers call my literature review citation stacking?▼

Citation stacking happens when every sentence opens with a citation but no independent logical chain exists. A useful test is drafting your theory section with zero citations first; if the argument collapses without them, the citations were decoration rather than support for your own reasoning.