query-reactome
CommunityDiscover and analyze Reactome biological pathways
AuthorRunchuan-BU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Enable researchers to quickly find, inspect, and analyze biological pathways and individual reactions without manually navigating Reactome APIs or parsing heterogeneous results.
Core Features & Use Cases
- Keyword pathway search: find pathway records and IDs using natural-language queries.
- Pathway details and participants: retrieve pathway metadata, component proteins/genes, and reaction summaries.
- Pathway enrichment: submit gene lists to AnalysisService to identify enriched Reactome pathways and associated statistics.
- Use Case: given a list of differentially expressed genes, identify the top Reactome pathways, fetch diagrams, and list constituent proteins for downstream interpretation.
Quick Start
Run a pathway enrichment on the gene list BRCA1, BRCA2, TP53, ATM, CHEK2 and return the top Reactome pathways with p-values and found gene counts.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: query-reactome Download link: https://github.com/Runchuan-BU/BioClaw/archive/main.zip#query-reactome Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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