pydeseq2
CommunityPythonic DESeq2 for differential expression analysis
Authorovachiever
Version1.0.0
Installs0
System Documentation
What problem does it solve?
PyDESeq2 provides a Python implementation of DESeq2 for differential expression analysis on bulk RNA-seq data, enabling Wald tests, multiple testing correction, and LFC shrinkage in Python.
Core Features & Use Cases
- DESeq2-style normalization, dispersion estimation, and LFC fitting
- Wald tests with BH FDR control
- Optional apeGLM LFC shrinkage for visualization
- Full workflow from counts + metadata to results
Quick Start
Load counts and metadata, run DESeq2 pipeline, and extract significant genes.
Dependency Matrix
Required Modules
pydeseq2pandasnumpyscipy
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pydeseq2 Download link: https://github.com/ovachiever/droid-tings/archive/main.zip#pydeseq2 Please download this .zip file, extract it, and install it in the .claude/skills/ directory.