proteomics-structural
OfficialMap protein interactions with XL-MS.
Education & Research#mass spectrometry#cross-linking#proteomics#structural biology#protein interactions#XL-MS
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex and computationally intensive process of analyzing cross-linking mass spectrometry (XL-MS) data, which is crucial for identifying protein-protein interactions and structural interfaces.
Core Features & Use Cases
- XL-MS Data Analysis: Processes data from tools like XlinkX, pLink, or xiSEARCH.
- Interaction Mapping: Identifies inter- and intra-protein crosslinks.
- Distance Constraint Validation: Assesses the physical plausibility of identified crosslinks based on linker length.
- Use Case: Analyze a dataset of cross-linked peptides to generate a report detailing confirmed protein-protein interactions and their spatial proximity, aiding in understanding cellular machinery.
Quick Start
Run structural proteomics analysis on the provided crosslinks data file using the default XlinkX method.
Dependency Matrix
Required Modules
numpypandas
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: proteomics-structural Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#proteomics-structural Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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