proteomics-quantification

What problem does it solve?

This Skill automates the process of quantifying protein and peptide abundance from mass spectrometry data, handling various experimental workflows like LFQ, TMT, and DIA. It standardizes the output across different methods, making downstream analysis more robust.

Core Features & Use Cases

• Multiple Quantification Methods: Supports Label-Free Quantification (LFQ), Spectral Counting, and Intensity-Based Absolute Quantification (iBAQ).
• Standardized Output: Generates consistent intensity matrices and reports regardless of the chosen method.
• Use Case: You have raw peptide identification results from a mass spectrometry experiment and need to generate a protein abundance table for differential expression analysis. This Skill can process your data using your preferred quantification method (e.g., LFQ) and provide the necessary output.

Quick Start

Run the proteomics quantification skill using the provided demo data.