proteomics-ms-qc
OfficialEnsure proteomics data integrity.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill addresses the critical need for early detection of issues in mass spectrometry data, preventing costly downstream analysis on compromised samples and ensuring the reliability of proteomics experiments.
Core Features & Use Cases
- Automated QC Metrics: Computes essential quality control statistics like missing value rates, coefficient of variation (CV), and intensity distributions.
- Sample Completeness Analysis: Assesses the proportion of detected proteins/peptides for each sample.
- Use Case: Before performing differential expression analysis, run this Skill on your raw proteomics data to identify samples with high missingness or poor CVs, allowing you to decide whether to exclude them from further analysis.
Quick Start
Run mass spectrometry quality control on the provided data file 'my_proteomics_data.csv'.
Dependency Matrix
Required Modules
None requiredComponents
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: proteomics-ms-qc Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#proteomics-ms-qc Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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