pride-database
CommunityAccess PRIDE proteomics data via API.
Education & Research#bioinformatics#mass spectrometry#data retrieval#proteomics#pride archive#peptide identification
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill allows users to programmatically search and retrieve mass spectrometry-based proteomics datasets, peptide identifications, and raw data files from the PRIDE Archive, a crucial resource for biological research.
Core Features & Use Cases
- Dataset Discovery: Find experiments by organism, tissue, disease, or instrument.
- Data Retrieval: Download RAW/mzML files, peptide/PSM identifications, and protein-level evidence.
- Use Case: A researcher wants to find all published proteomics studies on Alzheimer's disease in human brain tissue. They can use this Skill to query the PRIDE Archive, identify relevant datasets, and download the associated identification files for meta-analysis.
Quick Start
Use the pride-database skill to search for proteomics projects related to 'Alzheimer's disease' in 'Homo sapiens'.
Dependency Matrix
Required Modules
requestspandasmatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pride-database Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#pride-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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