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pdbe-api

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Query PDBe data from Coot via REST and Solr.

Data & Analytics#REST#bioinformatics#JSON#pdbe#PDBe-api#coot
Authorpemsley
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill enables querying the PDBe REST and Solr APIs from within Coot to access structure metadata, validation data, revision history, and search capabilities.

Core Features & Use Cases

  • PDBe REST access: Retrieve structure summaries, validation reports, and revision details directly inside Coot.
  • Ligand and compound data: Fetch information on ligands, compounds, and their metadata for quick analysis.
  • Solr search integration: Run advanced PDBe search queries to discover related structures, assemblies, and bindings.

Quick Start

From within Coot, fetch the PDBe structure summary for 4wa9 using coot_get_url_as_string_py and parse the JSON response.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: pdbe-api
Download link: https://github.com/pemsley/coot/archive/main.zip#pdbe-api

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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