paper-summarize

Summarize paper abstracts into Key Findings, Methodology, and Relevance in Obsidian and Zotero.

45|7|Updated Apr 6, 2026
One-click install
npx skills add https://github.com/WenyuChiou/research-hub --skill paper-summarize-wenyuchiou
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: paper-summarize
Source: https://github.com/WenyuChiou/research-hub/tree/main/skills/paper-summarize
Command: npx skills add https://github.com/WenyuChiou/research-hub --skill paper-summarize-wenyuchiou

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

After research-hub ingests a cluster of cited papers, per-paper notes in Obsidian and Zotero can be underdeveloped or missing. This skill fills that gap by generating concise, evidence-backed Key Findings, Methodology, and Relevance for each paper.

Core Features & Use Cases

  • Per-paper summaries: generates Key Findings, Methodology, and Relevance for every paper using the abstract as input.
  • Synchronous dual-write: updates Obsidian markdown notes and Zotero child notes atomically, with rollback if one write fails.
  • LLM-driven accuracy: uses a configurable LLM CLI to produce structured, reference-traceable summaries anchored to the abstract.
  • Cluster workflows: ideal after auto-ingest or during literature review sessions to surface paper-level insights.

Quick Start

Trigger the summarize workflow for a cluster to populate per-paper Key Findings, Methodology, and Relevance in both Obsidian and Zotero.

Frequently Asked Questions about paper-summarize

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automatically summarize research papers into Obsidian notes?▼

You can automatically summarize research papers into Obsidian notes by generating per-paper Key Findings, Methodology, and Relevance from abstracts. This skill performs a transactional dual-write to update both Obsidian markdown and Zotero child notes atomically.

Can I sync paper summaries between Zotero and Obsidian without data conflicts?▼

Yes, you can sync paper summaries between Zotero and Obsidian without conflicts using a synchronous dual-write mechanism. It executes transactional updates with a rollback feature that automatically reverts changes if a Zotero write operation fails.

How to generate Key Findings and Methodology from a paper abstract?▼

To generate Key Findings and Methodology from a paper abstract, the skill uses a configurable LLM CLI to produce structured, reference-traceable summaries. It processes each paper in a cluster with a dedicated LLM call anchored directly to the abstract text.

What happens to literature summaries if a paper lacks an adequate abstract?▼

If a paper lacks an adequate abstract during literature summarization, the system skips the automatic generation process. It marks the incomplete entry with a 'PDF needed' marker, ensuring only properly anchored summaries are created.

Does the paper summarize workflow validate DOI and Zotero keys before processing?▼

Yes, the paper summarize workflow validates inputs including DOI, year, and Zotero keys before processing. This validation ensures data integrity before executing the LLM-driven summarization and the subsequent transactional dual-writes.

When do I need per-paper notes during a literature review?▼

You need per-paper notes during a literature review when working with a cluster of cited papers that have underdeveloped or missing metadata. This skill fills that gap by automatically surfacing evidence-backed insights for each published work.