organ-axis-complete
CommunityBuild organ-wide spatial axes from landmarks.
AuthorKetomihine
Version1.0.0
Installs0
System Documentation
What problem does it solve?
OrganAxis provides a principled way to map tissue sections to a common coordinate reference, enabling robust cross-sample spatial comparisons by deriving axes from anatomical landmarks rather than high-dimensional gene space.
Core Features & Use Cases
- CCF construction from spatial landmarks to align samples across platforms and resolutions.
- Hexagonal point grid mapping to harmonize sampling frequency and annotate tissues consistently.
- Multi-sample diagonal integration & axis development to model organ-specific axes and compare across datasets.
Quick Start
Use OrganAxis to generate a Common Coordinate Framework for a tissue section by supplying a set of spatial landmarks and a reference grid; run the HPG generator and sampling calculator to create aligned coordinates and cross-platform mappings.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
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Please help me install this Skill: Name: organ-axis-complete Download link: https://github.com/Ketomihine/my_skills/archive/main.zip#organ-axis-complete Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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