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nwb_conversion

Official

Convert neurophysiology data to NWB automatically.

Data & Analytics#conversion#nwb#neurophysiology#neuroconv#electrophysiology#spikeglx
AuthorPython-AI-Solutions
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Converting diverse neurophysiology data to NWB is time-consuming and error-prone without standardized pipelines.

Core Features & Use Cases

  • Automatic format detection: Identifies SpikeGLX, OpenEphys, Neuropixels, and more to streamline workflows.
  • NWB conversion via NeuroConv: Handles metadata mapping, file integrity checks, and versioned outputs for DANDI-ready data.
  • Error handling & reconversion: Provides friendly error explanations, automatic cleanup, and retry workflows for robust pipelines.
  • Use Case: A lab transfers a raw Neuropixels or SpikeGLX dataset to NWB with preservation of metadata and a verifiable checksum.

Quick Start

Run the NWB conversion on a dataset folder containing SpikeGLX or OpenEphys data to generate an NWB file and a SHA256 checksum.

Dependency Matrix

Required Modules

neuroconvpynwbhdmfnumpypydanticspikeinterfaceneo

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: nwb_conversion
Download link: https://github.com/Python-AI-Solutions/agentic-neurodata-conversion/archive/main.zip#nwb-conversion

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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