notebook-ai-agents-skill

Community

Narrative-first, reproducible notebooks.

Authorfmschulz
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Building reproducible, narrative-first notebooks is hard when environments drift, code runs are non-deterministic, and sharing results lacks an end-to-end verification gate. This skill provides a structured approach to authoring notebooks that load data reproducibly, use per-directory Pixi environments, and validate run-all execution.

Core Features & Use Cases

  • Narrative-first notebook structure with Markdown-guided code cells.
  • Per-directory Pixi environments to ensure reproducible kernels.
  • DuckDB-backed data loading patterns with project-relative paths.
  • End-to-end validation through scripts/execute_notebook.py for deterministic outcomes.
  • Guidance for plotting and reporting in a consistent style.

Quick Start

Run a full end-to-end validation on a notebook using the included execute_notebook script.

Dependency Matrix

Required Modules

nbclientnbformat

Components

scripts

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: notebook-ai-agents-skill
Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#notebook-ai-agents-skill

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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