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nextflow-development

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Run bioinformatics pipelines with ease.

Education & Research#data analysis#bioinformatics#nf-core#nextflow#rna-seq#atac-seq#variant calling
Author8GG-Git
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill automates the execution of complex bioinformatics pipelines (like RNA-seq, variant calling, and ATAC-seq analysis) directly within Claude, eliminating the need for manual command-line execution and environment setup.

Core Features & Use Cases

  • Pipeline Execution: Run nf-core pipelines (rnaseq, sarek, atacseq) for omics data analysis.
  • Environment Setup: Guides users through installing and verifying necessary tools (Docker, Nextflow, Java).
  • Data Preparation: Assists in downloading public data from GEO/SRA and generating compatible samplesheets.
  • Use Case: A researcher can provide a GEO accession number, and Claude will download the relevant RNA-seq data, set up the environment, and run the nf-core/rnaseq pipeline to generate gene expression counts.

Quick Start

Use the nextflow-development skill to analyze the RNA-seq data from GEO accession GSE110004.

Dependency Matrix

Required Modules

None required

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: nextflow-development
Download link: https://github.com/8GG-Git/knowledge-work-plugins/archive/main.zip#nextflow-development

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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