new-pipeline

What problem does it solve?

Quickly scaffolds a complete BioETL pipeline template for a new provider/entity, including configuration scaffolding, transformer registration hooks, and baseline verification checks to standardize onboarding and reduce setup time.

Core Features & Use Cases

• Scaffold boilerplate configuration and pipeline skeleton for a new provider/entity.
• Register and wire transformers and validation checks to enforce data quality baselines.
• Use case: adding a new data source (e.g., ChEMBL, PubChem, UniProt) into an existing BioETL deployment with minimal boilerplate.

Quick Start

Run the new-pipeline skill with your provider/entity identifiers to generate a ready-to-use BioETL pipeline skeleton, then follow the prompts to configure transformers and baseline checks.