napari-image-viewer

What problem does it solve?

This Skill provides an interactive, multi-dimensional viewer for scientific microscopy data, enabling efficient visualization, annotation, and quality-checking of complex image datasets.

Core Features & Use Cases

• Interactive Visualization: Displays 2D, 3D, and 4D image data with multiple layer types (Image, Labels, Points, Shapes).
• Annotation Tools: Supports real-time annotation for training data or region of interest definition.
• Plugin Integration: Works seamlessly with popular bioimage analysis plugins like Cellpose and StarDist.
• Headless Export: Allows for automated screenshot generation in non-GUI environments.
• Use Case: Reviewing segmentation masks generated by Cellpose, overlaying multiple fluorescent channels, or annotating cell boundaries for machine learning models.

Quick Start

Open a napari viewer with a sample image and add it as an image layer.