msa-advanced
CommunityAdvanced MSA with visualization and phylogeny.
Authordakesan
Version1.0.0
Installs0
System Documentation
## What problem does it solve? This Skill delivers advanced Multiple Sequence Alignment (MSA) and downstream analyses, including quality metrics, consensus extraction, phylogenetic trees, and publication-ready visuals.
## Core Features & Use Cases
- Support for ClustalW, Muscle, and MAFFT with quality scoring and consensus generation.
- Phylogenetic tree construction, distance matrices, and various visualization outputs.
- Use-case example: align several protein variants, extract a consensus, and visualize a publication-quality heatmap of identity.
Quick Start
python -c "from msa_advanced import MSARunner; msas=MSARunner(method='mafft'); alignment=msas.align('seqs.fasta')"
Dependency Matrix
Required Modules
biopythonpandasmatplotlibseabornscipy
Components
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: msa-advanced Download link: https://github.com/dakesan/cc-dnawork-plugin/archive/main.zip#msa-advanced Please download this .zip file, extract it, and install it in the .claude/skills/ directory.