microbiome-curation
OfficialCurate microbiome disease mechanisms with depth.
Education & Research#microbiome#dismech#dysbiosis#pathophysiology#keystone-taxa#scfa#colonization-resistance
Authormonarch-initiative
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Curates and structures microbiome-related pathophysiology into modular, traceable graph nodes to improve knowledge base consistency and reuse.
Core Features & Use Cases
- Atomic node decomposition of dysbiosis mechanisms (e.g., loss of diversity, keystone taxa, colonization resistance)
- Graph-based downstream relationships and evidence tagging to support causal reasoning
- Evidence integration with literature and BugSigDB signatures to anchor assertions
Quick Start
Create a modular microbiome mechanism graph for a given disorder, decomposing it into atomic nodes with downstream edges and linked evidence.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: microbiome-curation Download link: https://github.com/monarch-initiative/dismech/archive/main.zip#microbiome-curation Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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