metabolomics-pathway-enrichment
OfficialMap metabolites to pathways.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill transforms lists of metabolites into actionable biological insights by mapping them to known metabolic pathways, identifying key functional enrichments.
Core Features & Use Cases
- Pathway Enrichment Analysis: Perform Over-Representation Analysis (ORA) and Quantitative Enrichment Analysis (QEA) using KEGG and Reactome databases.
- Network Visualization: Generate network graphs to visualize metabolite-pathway interactions.
- Use Case: After identifying differentially expressed metabolites in a disease study, use this Skill to understand which biological pathways are most affected, providing a systems-level view of the metabolic changes.
Quick Start
Run metabolomics pathway enrichment analysis on the provided metabolite list using the default ORA method.
Dependency Matrix
Required Modules
numpypandasscipy
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: metabolomics-pathway-enrichment Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#metabolomics-pathway-enrichment Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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