loadingrnafromseurat
CommunityLoad processed Seurat objects into immunopipe.
Authorpwwang
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Load pre-existing Seurat objects into the immunopipe pipeline instead of starting from raw count matrices via SampleInfo. This enables analysis on already processed single-cell RNA-seq data stored in Seurat objects.
Core Features & Use Cases
- Supports input as Seurat RDS or qs/qs2 objects.
- Allows downstream analysis with immunopipe without SampleInfo.
- Works with multiple samples by providing a list of files.
Quick Start
Specify the Seurat object file in infile and run the pipeline, optionally skipping preprocessing if the object is already prepared.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: loadingrnafromseurat Download link: https://github.com/pwwang/immunopipe/archive/main.zip#loadingrnafromseurat Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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