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lifesciences-proteomics

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Map protein interactions across databases via MCP

Education & Research#bioinformatics#databases#enrichment#proteomics#protein#id-mapping#ppi
Authordonbr
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Queries protein databases (UniProt, STRING, BioGRID) to identify protein interactions, map identifiers, and support cross-database enrichment analysis.

Core Features & Use Cases

  • Cross-database protein lookup and ID mapping (UniProt, STRING, BioGRID)
  • Protein-protein interaction (PPI) network retrieval and enrichment
  • Fallback to curl-based queries when MCP tools are unavailable
  • Use Case: A researcher wants to map interactions for a protein and interpret GO terms

Quick Start

Query a protein across UniProt, STRING, and BioGRID to retrieve interactions and cross-reference IDs.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: lifesciences-proteomics
Download link: https://github.com/donbr/lifesciences-deepagents/archive/main.zip#lifesciences-proteomics

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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