lib-tiledbvcf
OfficialGenomic variant data storage & retrieval.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides an efficient and scalable solution for storing, querying, and analyzing large genomic variant datasets, overcoming the limitations of traditional VCF/BCF file handling.
Core Features & Use Cases
- Efficient Storage: Utilizes TileDB's sparse array technology for compressed and optimized storage of VCF/BCF data.
- Scalable Ingestion: Handles incremental addition of samples without costly merging.
- Parallel Queries: Enables fast, parallel querying across genomic regions and samples.
- Use Case: Analyze population genomics data by quickly querying allele frequencies for specific regions across thousands of samples stored in a TileDB-VCF dataset.
Quick Start
Install the necessary libraries using conda and activate the environment.
Dependency Matrix
Required Modules
tiledb-pytiledbvcf-pypandaspyarrownumpy
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: lib-tiledbvcf Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-tiledbvcf Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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