lib-scanpy
OfficialAnalyze single-cell RNA-seq data.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides a comprehensive pipeline for analyzing single-cell RNA-seq data, enabling researchers to understand cellular heterogeneity and function.
Core Features & Use Cases
- End-to-End Analysis: From quality control and normalization to dimensionality reduction, clustering, and marker gene identification.
- Visualization: Generates publication-quality plots for exploratory data analysis and result interpretation.
- Use Case: A biologist has generated scRNA-seq data and needs to identify different cell types, find marker genes for each type, and visualize the data using UMAP. This Skill can perform all these steps.
Quick Start
Use the lib-scanpy skill to perform a standard single-cell RNA-seq analysis workflow on your data.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: lib-scanpy Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-scanpy Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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