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lib-pyopenms

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Mass spectrometry analysis platform.

Data & Analytics#data analysis#bioinformatics#metabolomics#mass spectrometry#proteomics#pyopenms
Authorbiomaps-infra
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill provides a comprehensive platform for analyzing mass spectrometry data, streamlining complex proteomics and metabolomics workflows from raw data processing to identification and quantification.

Core Features & Use Cases

  • Data Handling: Read and write numerous mass spectrometry file formats (mzML, mzXML, etc.).
  • Signal Processing: Perform smoothing, filtering, peak picking, and normalization on spectral data.
  • Feature Detection & Linking: Identify and group chromatographic features across samples for quantitative analysis.
  • Identification: Process peptide and protein identification results, including FDR control.
  • Metabolomics: Specialized tools for untargeted metabolomics analysis.
  • Use Case: Analyze a large mzML file to detect features, identify peptides, and quantify proteins across multiple samples, generating a comprehensive report.

Quick Start

Use the lib-pyopenms skill to load the mzML file 'sample.mzML' and print the number of spectra.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: lib-pyopenms
Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-pyopenms

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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