lib-lamindb

What problem does it solve?

This Skill provides a robust framework for managing, querying, and tracking biological datasets, ensuring reproducibility and FAIR compliance.

Core Features & Use Cases

• Data Management: Store, version, and query diverse biological data types (scRNA-seq, spatial, etc.).
• Lineage Tracking: Automatically track computational workflows and data provenance.
• Ontology Integration: Standardize annotations using biological ontologies (genes, cell types, etc.).
• Use Case: A researcher needs to manage multiple scRNA-seq datasets, track the analysis pipeline, and ensure all cell types are annotated using the Cell Ontology. This Skill enables them to do so efficiently and reproducibly.

Quick Start

Use the lib-lamindb skill to track a new analysis run with parameters {'analysis': 'scRNA-seq QC and annotation'}.