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lib-flowio

Official

Parse and process flow cytometry data.

Data & Analytics#data extraction#bioinformatics#data parsing#numpy#flow cytometry#fcs files
Authorbiomaps-infra
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill simplifies the complex task of reading, parsing, and extracting data from Flow Cytometry Standard (FCS) files, a common format in biological research.

Core Features & Use Cases

  • FCS File Parsing: Read metadata, channel information, and event data from FCS files (versions 2.0-3.1).
  • Data Extraction & Conversion: Extract event data as NumPy arrays, convert to CSV or Pandas DataFrames.
  • File Creation: Generate new FCS files from processed data.
  • Use Case: You have a directory of FCS files from a recent experiment and need to extract the fluorescence intensity data for specific channels from each file to prepare for downstream analysis.

Quick Start

Use the lib-flowio skill to read the file 'experiment.fcs' and extract its event data as a NumPy array.

Dependency Matrix

Required Modules

flowio

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: lib-flowio
Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-flowio

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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