jgi-lakehouse
CommunityQuery JGI Lakehouse for genomics metadata fast.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
The JGI Lakehouse hosts centralized genomics metadata across GOLD, IMG, Mycocosm, and Phytozome, enabling researchers to discover projects, taxa, and provenance while avoiding scattered data sources.
Core Features & Use Cases
- Unified metadata discovery across GOLD, IMG, Mycocosm, and Phytozome via Dremio Lakehouse
- Token-based authentication, safe SQL exploration, and download coordination for IMG genome packages
- Use cases include taxonomy discovery, project/taxon mapping, and genome package retrieval from the JGI filesystem
Quick Start
Authenticate to the Lakehouse, run a sample query to discover GOLD/IMG taxa, and begin genome downloads.
Dependency Matrix
Required Modules
requestsurllib3
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: jgi-lakehouse Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#jgi-lakehouse Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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