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immunopipe-config

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Configure end-to-end immunopipe pipelines.

Data & Analytics#routing#config#pipeline#generate#rna-seq#immunopipe#data-type
Authorpwwang
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Generates end-to-end immunopipe pipeline configurations by assessing data type (RNA with or without TCR/BCR) and analysis goals, routing to the appropriate process skills for detailed configuration.

Core Features & Use Cases

  • Generates a complete pipeline configuration skeleton tailored to RNA-only or RNA+TCR/BCR analyses.
  • Routes to specific process configuration skills and configures pipeline-level options (name, outdir, scheduler).
  • Supports quick-start workflows and validation guidance for immediate execution.

Quick Start

Start by running the immunopipe-config skill to generate a new TOML config and route to the appropriate process skills.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: immunopipe-config
Download link: https://github.com/pwwang/immunopipe/archive/main.zip#immunopipe-config

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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