igv-screenshots
CommunityAutomate IGV screenshots from BAM files.
Authorsahuno
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Generating consistent, publication-quality IGV screenshots from BAM files and region definitions can be tedious and error-prone; this skill automates the process to produce reliable visuals quickly.
Core Features & Use Cases
- Automated IGV screenshot generation from one or more BAMs and a regions file.
- Supports methylation coloring (ONT/PacBio), haplotype coloring, and multi-sample comparisons.
- Use case: generate visuals for multiple regions across samples for publications or reports.
Quick Start
Run the IGV screenshot workflow by providing BAMs and a regions file; outputs are saved in an organized directory structured as IGV_{genome}_{description}.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: igv-screenshots Download link: https://github.com/sahuno/llm_configs/archive/main.zip#igv-screenshots Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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