gtars

What problem does it solve?

This Skill streamlines complex genomic data analysis by providing a high-performance toolkit for interval manipulation, overlap detection, coverage analysis, and ML preprocessing.

Core Features & Use Cases

• Genomic Interval Operations: Efficiently process BED files, detect overlaps, and generate coverage tracks.
• ML Preprocessing: Tokenize genomic regions for machine learning models.
• Use Case: Analyze ChIP-seq peaks by finding overlaps with promoter regions, generating coverage profiles, and preparing data for deep learning models.

Quick Start

Use the gtars skill to find overlaps between 'peaks.bed' and 'promoters.bed'.