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gsea-enrichment-analysis

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Robust gene set enrichment workflows.

Data & Analytics#KEGG#GSEA#pathway enrichment#omics#GO#Reactome#genesets
AuthorStarlitnightly
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill guides correct GSEA and pathway enrichment workflows, emphasizing proper data formats and API usage to avoid common errors in OmicVerse.

Core Features & Use Cases

  • Correct Geneset Format: always load gene sets into a dictionary before enrichment.
  • File Format Support: load .txt, .gmt, or convert .json into the required dictionary.
  • Complete Workflow: setup, load gene sets, run enrichment, and visualize results.
  • Common Errors: troubleshooting missing pathways or dictionary vs. string path issues.

Quick Start

Load GO Biological Process gene sets into a dictionary and run enrichment on your DEG list.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: gsea-enrichment-analysis
Download link: https://github.com/Starlitnightly/omicverse/archive/main.zip#gsea-enrichment-analysis

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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