giottosuite-local
CommunityGiotto Suite spatial transcriptomics toolkit.
AuthorKetomihine
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill unifies the process of analyzing spatial transcriptomics data by providing a turnkey Giotto Suite workflow for data import, processing, and visualization.
Core Features & Use Cases
- Data import and object creation: load data from Visium, Xenium, or CosMx and build Giotto objects ready for analysis.
- Spatial analytics pipeline: QC, normalization, dimensionality reduction (PCA/UMAP), clustering, spatial networks, and domain detection.
- 3D & cross-section workflows: dimensionality reductions, cross-sections, subcellular analyses, and multi-omics integration.
- Visualization & reporting: generate publication-ready plots and export results with tutorials and references.
Quick Start
Use GiottoSuite to load a Visium dataset, create a Giotto object, run normalization, PCA, clustering, and visualize results.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: giottosuite-local Download link: https://github.com/Ketomihine/my_skills/archive/main.zip#giottosuite-local Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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