gget-genomic-databases
CommunityQuery 20+ genomic databases with one tool.
Education & Research#bioinformatics#protein structure#genomics#drug discovery#sequence analysis#database query
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides a unified interface to over 20 genomic and biological databases, simplifying complex data retrieval and analysis tasks that would otherwise require learning and interacting with multiple disparate tools and APIs.
Core Features & Use Cases
- Unified Access: Query Ensembl, UniProt, NCBI, BLAST, AlphaFold, Enrichr, OpenTargets, cBioPortal, COSMIC, and more through a single command-line or Python interface.
- Diverse Queries: Retrieve gene information, sequences, protein structures, perform sequence alignments, predict structures, find disease/drug associations, analyze cancer genomics data, and more.
- Use Case: Quickly find the protein sequence for a given gene ID, predict its 3D structure using AlphaFold, and then search for known disease associations and potential drug targets using OpenTargets, all within a few lines of Python code.
Quick Start
Use the gget skill to find information for the gene BRCA1 in humans.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: gget-genomic-databases Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#gget-genomic-databases Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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