genomics-qc
OfficialEnsure genomic data integrity.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill addresses the critical need for quality control in genomic sequencing data, preventing issues caused by low-quality reads, adapters, or incorrect base calls that can corrupt downstream analyses.
Core Features & Use Cases
- Comprehensive QC: Assesses Phred quality scores, GC/N content, adapter contamination, and read length distribution.
- Read Trimming: Automatically removes adapter sequences and low-quality bases.
- Reporting: Generates detailed reports and MultiQC summaries for easy interpretation.
- Use Case: Before aligning sequencing reads to a reference genome, run this Skill to identify and remove adapter sequences and low-quality bases, ensuring accurate alignment results.
Quick Start
Run quality control on the provided fastq file 'sample_R1.fastq.gz' and save the results to the 'qc_output' directory.
Dependency Matrix
Required Modules
numpypandas
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: genomics-qc Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#genomics-qc Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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