genomics-cnv-calling
OfficialDetect copy number variants in genomic data.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex process of identifying copy number variations (CNVs) such as amplifications and deletions within genomic sequencing data, which is crucial for understanding genetic diseases and cancer.
Core Features & Use Cases
- Multiple Algorithms: Supports CNVkit, GATK gCNV, and Control-FREEC for robust CNV detection.
- Flexible Modes: Handles tumor-normal pairs, tumor-only samples, and germline analysis.
- Use Case: Analyze a tumor exome sequencing dataset to identify specific gene amplifications or deletions that may be driving cancer progression, using CNVkit for rapid analysis.
Quick Start
Run copy number variant detection on the provided BAM file using CNVkit.
Dependency Matrix
Required Modules
CNVkit
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: genomics-cnv-calling Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#genomics-cnv-calling Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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