genomics-assembly
OfficialAssemble genomes from reads
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex and memory-intensive process of de novo genome assembly, providing quality assessment metrics and wrapping popular assemblers.
Core Features & Use Cases
- Automated Assembly: Wraps SPAdes, Megahit, Flye, and Canu for de novo genome assembly from short and long reads.
- Quality Assessment: Calculates essential metrics like N50, N90, L50, L90, GC content, and contig length distribution, compatible with QUAST.
- Use Case: Assemble a newly sequenced bacterial genome using long reads with Flye, then assess the assembly quality and completeness.
Quick Start
Assemble the provided genome reads using the genomics-assembly skill with the Flye assembler.
Dependency Matrix
Required Modules
numpypandas
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: genomics-assembly Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#genomics-assembly Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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