genomics-alignment
OfficialAlign reads to reference genomes.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the process of aligning short and long sequencing reads to reference genomes, preventing errors and ensuring standardized outputs.
Core Features & Use Cases
- Multiple Aligners: Supports BWA-MEM, Bowtie2, and Minimap2 for flexible alignment.
- Standardized Output: Generates sorted BAM files and comprehensive alignment statistics.
- Use Case: Aligning millions of DNA sequencing reads from a new sample to a reference genome to prepare for variant calling.
Quick Start
Run alignment on your fastq data using BWA.
Dependency Matrix
Required Modules
None requiredComponents
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: genomics-alignment Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#genomics-alignment Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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