foldseek
OfficialFind structural similarities quickly with Foldseek.
Authoradaptyvbio
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill automates structure similarity search for proteins using Foldseek.
Core Features & Use Cases
It supports locating homologous structures, remote homologs, and clustering across large structure databases such as PDB and AlphaFold DB, enabling rapid assessment of design plausibility.
- Structural homology search
- Remote homolog detection
- Clustering and similarity ranking
- Use Case: identify designs with desired fold similarity to known structures
Quick Start
Use Foldseek to search a query structure against a database: foldseek easy-search query.pdb pdb100 results.m8 tmp/ --format-output query,target,pident,alnlen,evalue,bits
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: foldseek Download link: https://github.com/adaptyvbio/protein-design-skills/archive/main.zip#foldseek Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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