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flowio-flow-cytometry

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Parse and create Flow Cytometry Standard files.

Data & Analytics#bioinformatics#data generation#data parsing#numpy#flow cytometry#fcs files
Authorjaechang-hits
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill simplifies the process of reading and writing Flow Cytometry Standard (FCS) files, enabling efficient data extraction and file generation for cytometry data.

Core Features & Use Cases

  • FCS File Parsing: Read event data and metadata from FCS files (versions 2.0-3.1).
  • Data Extraction: Extract event data as NumPy arrays and channel metadata.
  • FCS File Creation: Generate new FCS files from NumPy arrays and specified channel information.
  • Use Case: You have a directory of .fcs files from a recent experiment. Use this Skill to extract the event data from each file into NumPy arrays for further analysis and visualization.

Quick Start

Use the flowio-flow-cytometry skill to read the event data from the file 'experiment.fcs' into a NumPy array.

Dependency Matrix

Required Modules

flowionumpypandas

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: flowio-flow-cytometry
Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#flowio-flow-cytometry

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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