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envi-pkg-local-improved

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Docs and tutorials for ENVI spatial analysis toolkit.

Education & Research#documentation#tutorials#spatial-transcriptomics#scRNA-seq#covet#envi
AuthorKetomihine
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill consolidates ENVI spatial transcriptomics documentation, tutorials, and Python sources to help researchers learn, implement, and extend ENVI workflows.

Core Features & Use Cases

  • Official documentation suite: Core concepts, installation guidance, API references, and tutorials for ENVI and COVET.
  • Practical workflows: Step-by-step MERFISH and scRNA-seq integration, latent embedding generation, imputation, and niche analysis.
  • Use case examples: End-to-end pipelines from data loading to visualization, including COVET-based niche computation and diffusion/UMAP analyses.

Quick Start

Clone the repository and start with the Getting Started guides in references/getting_started.md, then follow the tutorials to run ENVI end-to-end.

Dependency Matrix

Required Modules

None required

Components

references

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Please help me install this Skill:
Name: envi-pkg-local-improved
Download link: https://github.com/Ketomihine/my_skills/archive/main.zip#envi-pkg-local-improved

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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