emdb-database

What problem does it solve?

This Skill provides programmatic access to the Electron Microscopy Data Bank (EMDB), enabling users to search for and retrieve cryo-EM density maps, fitted atomic models, and associated metadata.

Core Features & Use Cases

• Search EMDB: Find cryo-EM density maps by keywords, resolution, method, or organism.
• Retrieve Map Info: Get download URLs for .map.gz density files and associated PDB models.
• Fetch Metadata: Obtain detailed entry information, including resolution, reconstruction method, and publications.
• Use Case: You need to find all available cryo-EM density maps for the SARS-CoV-2 spike protein with a resolution better than 3.0 Å. This Skill can query EMDB, filter the results, and provide a list of relevant entries with their download links.

Quick Start

Use the emdb-database skill to search for cryo-EM maps of the 'ribosome 70S bacterial' and print the first 5 results.