eeg-report

Aggregate EEG stage outputs into mne.Report HTML and Markdown summaries.

Updated Aug 27, 2026
One-click install
npx skills add https://github.com/dengzhe-hou/auto-eeg-analysis --skill eeg-report
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: eeg-report
Source: https://github.com/dengzhe-hou/auto-eeg-analysis/tree/main/skills/eeg-report
Command: npx skills add https://github.com/dengzhe-hou/auto-eeg-analysis --skill eeg-report

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Producing publication-quality EEG reporting requires stitching together many pipeline outputs, enforcing COBIDAS-MEEG completeness, and ensuring every claim is traceable to figures and stage artifacts.

Core Features & Use Cases

  • Self-contained HTML report (mne.Report): Embeds acquisition, preprocessing, ICA, epoching, evoked/TFR results, and per-claim statistical summaries into a single interactive HTML artifact suitable for sharing and review.
  • Markdown summary builder: Generates a structured REPORT.md containing the same core content with explicit per-claim verdicts and figure links for manuscript drafting workflows.
  • Reproducibility receipt (REPRO_RECEIPT.md): Records versions, git state, RNG seeds, and SHA-256 hashes for key inputs/outputs so results can be independently verified.
  • COBIDAS-MEEG compliance checklist: Produces an explicit checklist and flags missing reporting items to reduce Reviewer 2 back-and-forth.
  • Stage inventory: Scans the project directory to inventory available stage outputs and writes report-stage/STAGE_INVENTORY.json for traceability.

Quick Start

Use the eeg-report skill on your project directory after eeg-stats and eeg-figure are complete to create report-stage/report.html and report-stage/REPORT.md together with report-stage/REPRO_RECEIPT.md.

Frequently Asked Questions about eeg-report

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate a COBIDAS-ready EEG report from MNE pipeline outputs?▼

To generate a COBIDAS-ready EEG report, aggregate post-processing outputs like FINDINGS.md and figure-stage files into a self-contained HTML using mne.Report, ensuring acquisition, preprocessing, and per-claim statistics are fully traceable.

What is COBIDAS-MEEG compliance and how is it enforced in EEG reporting?▼

COBIDAS-MEEG compliance requires reporting specific EEG methodology details to ensure reproducibility, enforced here by generating an explicit checklist that flags missing reporting items to reduce review friction.

How do I create a reproducibility receipt for EEG statistical analysis?▼

Create a reproducibility receipt by recording software versions, git state, RNG seeds, and SHA-256 hashes for key inputs and outputs, writing them into a REPRO_RECEIPT.md file for independent verification.

Can I draft a manuscript from mne.Report HTML outputs?▼

Yes, you can draft a manuscript using a matching Markdown summary builder that extracts core content, explicit per-claim verdicts, and figure links from the HTML report for manuscript workflows.

What inputs are required to build a complete EEG analysis report?▼

Building a complete EEG analysis report requires ANALYSIS_PLAN.md, DATASET_BRIEF.md, FINDINGS.md, ENVIRONMENT.json, and figure-stage outputs to populate the HTML and Markdown summaries without fabricating data.

Does the EEG report builder track pipeline stage artifacts?▼

Yes, the builder scans the project directory to inventory available stage outputs and writes a STAGE_INVENTORY.json file, ensuring every statistical claim and figure is traceable to its pipeline artifact.