deeptools-ngs-analysis
CommunityAnalyze NGS data with deepTools.
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides a powerful command-line toolkit for processing and visualizing high-throughput sequencing data, simplifying complex NGS analysis workflows.
Core Features & Use Cases
- Coverage Tracks: Convert BAM alignments to normalized bigWig coverage tracks.
- Quality Control: Assess sample quality with correlation, PCA, and fingerprint plots.
- Visualization: Generate publication-quality heatmaps and profile plots around genomic features.
- Use Case: Analyze ChIP-seq data by converting BAM files to normalized bigWig tracks, generating heatmaps around TSS, and assessing enrichment strength.
Quick Start
Convert the BAM file 'sample.bam' to a normalized bigWig file named 'sample.bw' using RPGC normalization.
Dependency Matrix
Required Modules
deeptoolssamtools
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: deeptools-ngs-analysis Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#deeptools-ngs-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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