deep-research

Orchestrates a 13-agent pipeline for systematic academic research and APA 7.0 report generation.

Updated Mar 23, 2026
One-click install
npx skills add https://github.com/hanasho744/codex --skill deep-research-hanasho744
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: deep-research
Source: https://github.com/hanasho744/codex/tree/main/.agents/skills/deep-research
Command: npx skills add https://github.com/hanasho744/codex --skill deep-research-hanasho744

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve? Conducting rigorous academic research requires coordinating question formulation, systematic literature search, source verification, synthesis, bias assessment, and report writing — a process that is slow, error-prone, and hard to keep methodologically consistent when done manually. ## Core Features & Use Cases - 13-Agent Research Pipeline: Six phases (scoping, investigation, analysis, composition, review, revision) with dedicated agents for research questions, methodology design, bibliography, source verification, synthesis, editorial review, ethics review, and devil's advocate checkpoints. - 8 Operational Modes: full research, quick brief, paper review, literature review, fact-check, three-way WHY/HOW/WHAT paper scan, Socratic guided research dialogue, and PRISMA 2020 systematic review with optional meta-analysis (RoB 2, ROBINS-I, GRADE). - Citation Integrity Verification: Cross-index triangulation against Semantic Scholar, OpenAlex, Crossref, and arXiv plus Chinese-literature resolution (ISTIC/CNKI DOIs, PubMed coordinates) to detect fabricated or chimeric citations. - Use Case: A graduate student with only a vague interest in declining birth rates and higher education uses Socratic mode to converge on a FINER-scored research question, then escalates to a full systematic review with risk-of-bias assessment and a PRISMA-compliant report. ## Quick Start Ask the assistant to research a topic, for example: Research the impact of AI on higher education quality assurance.

Frequently Asked Questions about deep-research

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I run a deep research pipeline on a topic?▼

Provide a research topic or question, such as "Research the impact of AI on higher education quality assurance". The pipeline runs six phases from scoping through revision, producing a full APA 7.0 report of 3,000-8,000 words with verified sources.

What is the difference between full, quick, and lit-review modes?▼

Full mode runs all core agents and produces a complete APA report. Quick mode uses four agents for a 500-1,500 word brief. Lit-review mode stops after synthesis, delivering an annotated bibliography plus thematic synthesis of 1,500-4,000 words.

How does the skill detect fabricated or hallucinated citations?▼

Each source is resolved against Semantic Scholar, OpenAlex, Crossref, and arXiv, with unmatched identifiers flagged as contamination signals. Chinese-language references are additionally checked through ISTIC/CNKI DOI registration agencies and PubMed coordinate queries.

Can it guide me when I don't have a clear research question yet?▼

Yes, Socratic mode activates when you express uncertainty or ask to be guided. A mentor agent uses five layers of Socratic questioning to help you converge on a researchable question without generating answers for you.

Does it support PRISMA systematic reviews and meta-analysis?▼

Yes, systematic-review mode follows a PRISMA 2020 five-phase protocol with protocol registration, screening, risk-of-bias assessment using RoB 2 and ROBINS-I, effect-size and heterogeneity analysis, GRADE rating, and a 27-item report template.

When should I use academic-paper instead of deep-research?▼

Use academic-paper when you are writing a paper rather than conducting research. Deep-research hands off its research question brief, methodology blueprint, bibliography, and synthesis report to academic-paper when you say you want to write a paper based on the research.