db-jaspar
OfficialQuery JASPAR for TF binding profiles.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps researchers and bioinformaticians quickly access and utilize the JASPAR database to understand transcription factor binding sites, aiding in the interpretation of genomic regulatory elements and variants.
Core Features & Use Cases
- Search TF Profiles: Find transcription factor binding profiles by name, species, or class.
- Fetch Matrices: Retrieve specific Position Frequency Matrices (PFMs) or convert them to Position Weight Matrices (PWMs).
- Scan DNA Sequences: Predict TF binding sites within a given DNA sequence.
- Variant Impact Analysis: Assess how genetic variants might affect TF binding.
- Use Case: Identify all potential binding sites for a specific transcription factor (e.g., CTCF) within a gene's promoter region to understand its regulatory role.
Quick Start
Use the db-jaspar skill to search for transcription factor profiles for the human species.
Dependency Matrix
Required Modules
requestsnumpy
Components
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: db-jaspar Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#db-jaspar Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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