db-gtex
OfficialExplore tissue-specific gene expression.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps researchers interpret genetic variants by querying the Genotype-Tissue Expression (GTEx) database to understand gene expression patterns and regulatory effects across different human tissues.
Core Features & Use Cases
- Gene Expression Analysis: Retrieve median gene expression levels (TPM) across 54 human tissues.
- eQTL and sQTL Lookup: Identify genetic variants associated with gene expression (eQTLs) or splicing (sQTLs) in specific tissues.
- GWAS Variant Interpretation: Link non-coding GWAS variants to potential target genes by finding eQTLs in relevant tissues.
- Use Case: Investigate how a specific genetic variant might affect the expression of a gene in the brain versus the liver.
Quick Start
Query GTEx for the median expression of the gene APOE across all tissues.
Dependency Matrix
Required Modules
requestspandas
Components
references
💻 Claude Code Installation
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Please help me install this Skill: Name: db-gtex Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#db-gtex Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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