db-geo
OfficialAccess NCBI GEO for genomics data.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the process of accessing and analyzing gene expression and genomics data from the NCBI Gene Expression Omnibus (GEO) database, which is crucial for transcriptomics and expression analysis.
Core Features & Use Cases
- Data Discovery: Search for microarray and RNA-seq datasets (GSE, GSM, GPL) using keywords, organisms, and experimental conditions.
- Data Retrieval: Download SOFT and Matrix files for detailed analysis.
- Analysis Support: Provides tools and examples for quality control, differential expression analysis, and correlation studies.
- Use Case: A researcher needs to find gene expression data related to a specific cancer type in humans. They can use this Skill to search GEO, download relevant datasets, and perform differential expression analysis to identify key genes.
Quick Start
Use the db-geo skill to download the series matrix file for GSE123456.
Dependency Matrix
Required Modules
GEOparsebiopythonpandasnumpyscipymatplotlibseabornstatsmodels
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: db-geo Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#db-geo Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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