db-ensembl
OfficialQuery Ensembl genome database
Education & Research#bioinformatics#genomics#sequence retrieval#variant analysis#ensembl#gene lookup
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to the Ensembl genome database, enabling researchers to query vast amounts of genomic data for over 250 species without manual database interaction.
Core Features & Use Cases
- Gene Information: Retrieve details by symbol or ID.
- Sequence Retrieval: Fetch DNA, transcript, or protein sequences.
- Variant Analysis: Predict consequences using VEP.
- Comparative Genomics: Find orthologs and paralogs.
- Use Case: A researcher needs to find all human genes that are orthologous to a specific mouse gene and retrieve their protein sequences.
Quick Start
Use the db-ensembl skill to find orthologs for the human gene BRCA2 in the mouse species.
Dependency Matrix
Required Modules
ensembl_restrequests
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: db-ensembl Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#db-ensembl Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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