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data-io-loading

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Load and save omics data formats.

Software Engineering#omics#data loading#io#anndata#h5ad#visium#10x genomics
AuthorStarlitnightly
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill simplifies and standardizes the process of loading and saving various omics data formats, ensuring compatibility and ease of use within the OmicVerse ecosystem.

Core Features & Use Cases

  • Universal Data Reader: ov.read() auto-detects and loads formats like h5ad, 10x H5/MTX, Visium, Nanostring, and CSV.
  • Specialized Readers: Dedicated functions for specific formats (e.g., ov.io.read_10x_h5, ov.io.spatial.read_visium) offer enhanced control and format-specific handling.
  • Serialization: ov.io.save() and ov.io.load() provide robust methods for saving and loading Python objects.
  • Use Case: Load a 10x Genomics dataset from a Matrix Market directory into an AnnData object for downstream single-cell analysis.

Quick Start

Use the data-io-loading skill to read the file 'pbmc3k.h5ad' into an AnnData object.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

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Please help me install this Skill:
Name: data-io-loading
Download link: https://github.com/Starlitnightly/omicclaw/archive/main.zip#data-io-loading

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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